Thanks for your help on my previous request.
Does IEDB provide a tool for epitope search of known currated MHC binding
epitopes in a whole protein?
For example, say I input the sequence:
And one part of the output might be:
position 71-87 taykefrvveldpsaki
Where taykefrvveldpsaki is a currated MHC binder in the IEDB.
I am thinking of a tool similar to the IEDB prediction tool at the link
below, except the results would be only known currated epitopes in the IEDB.
Thanks for your help!
You can do this with a substring search on the home page. Enter the string in the Epitope box next to the Linear Epitope button and choose "Substring" from the pull-down menu on the left. Click Search and a list of curated epitopes contained in the IEDB will be returned.