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  1. IEDB Solutions Center
  2. IEDB Publications
  3. Database Publications

Database Publications

Publications relevant to www.iedb.org; including meta-analyses performed by the IEDB team using data accessible through the database.

  • The Immune Epitope Database and Analysis Resource in Epitope Discovery and Synthetic Vaccine Design (2017)
  • Better living through ontologies at the Immune Epitope Database (2017)
  • Breaking confinement: unconventional peptide presentation by major histocompatibility (MHC) class I allele HLA-A*02:01 (2017)
  • Identifying Candidate Targets of Immune Responses in Zika Virus Based on Homology to Epitopes in Other Flavivirus Species (2016)
  • Immune Epitope Database and Analysis Resource (2016)
  • TepiTool: A Pipeline for Computational Prediction of T Cell Epitope Candidates (2016)
  • T-cell recognition is shaped by epitope sequence conservation in the host proteome and microbiome (2016)
  • The Ontology for Biomedical Investigations (2016)
  • Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove (2016)
  • An ontology for major histocompatibility restriction (2016)
  • The Length Distribution of Class I-Restricted T Cell Epitopes Is Determined by Both Peptide Supply and MHC Allele-Specific Binding Preference (2016)
  • NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length data sets (2016)
  • Ebola: an analysis of immunity at the molecular level (2015)
  • Reproducibility and Conflicts in Immune Epitope Data (2015)
  • The Use of the Immune Epitope Database to Study Autoimmune Epitope Data Related to Alopecia Areata (2015)
  • Gapped sequence alignment using artificial neural networks: application to the MHC class I system (2015)
  • Automatic Generation of Validated Specific Epitope Sets (2015)
  • Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification (2015)
  • LYRA, a webserver for lymphocyte receptor structural modeling (2015)
  • Analysis of Human RSV Immunity at the Molecular Level: Learning from the Past and Present (2015)
  • A Population Response Analysis Approach To Assign Class II HLA-Epitope Restrictions (2015)
  • Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes (2015)
  • Antibody specific epitope prediction - emergence of a new paradigm (2015)
  • The Much Overlooked “Materials and Methods” (Editorial) (2015)
  • Automated benchmarking of peptide-MHC class I binding predictions (2015)
  • The immune epitope database (IEDB) 3.0 (2014)
  • Conservancy of mAb Epitopes in Ebolavirus Glycoproteins of Previous and 2014 Outbreaks (2014)
  • Antibody informatics for drug discovery (2014)
  • Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions (2014)
  • NetTepi: an integrated method for the prediction of T cell epitopes (2014)
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