Randi Vita
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Activity overview
Latest activity by Randi Vita-
Randi Vita created an article,
A New Format for the Details Pages
The "Details" pages for the IEDB are changing! These changes do not affect the contents of the page, just the layout. The new layout is more compact and requires less scrolling in order to view the...
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Randi Vita created an article,
IEDB FAIRness
Read our 2018 publication assessing how well the IEDB complies with the FAIR principles of Findability, Accessibility, Interoperability and Reusability. These principles have been identified as goa...
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Randi Vita created an article,
TCR and Antibody Sequence Data
The IEDB now provides T cell receptor (TCR) and antibody (B cell receptor, BCR) sequence data. This data is presented on a new Results page tab and can be searched via a new Results page search pan...
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Randi Vita created an article,
Diseases in IEDB
This query feature allows users to query for the disease state of the host as stated by the authors. Users can select from the radio buttons for the higher level disease categories of Any Disease,...
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Randi Vita created an article,
Immunome Browser 3.0
Immunome Browser maps and visualizes queried in IEDB linear peptidic epitopes along the length of a protein sequence (a target, or reference, protein). The purpose of the tool is to allow users exp...
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Randi Vita created an article,
Protein Branch of the Molecule Finder
Individual GenPept proteins utilized by IEDB data are assigned to parent proteins from reference proteomes by sequence homology. These reference proteomes are graded by a star system that reflects ...
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Randi Vita created an article,
Host Search
The IEDB captures immune epitope data for all hosts described in the published literature. These span from humans to primates, goats, cows, dogs, rodents, camels, or any other species utilized in a...
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Randi Vita created an article,
IEDB Epitopes
In order to be consistent across all publications, the IEDB defines an epitope as peptides less than or equal to 50 amino acids in size and non-peptidic structures less than or equal to 5000 Dalton...
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Randi Vita created an article,
Questions About the Data in the IEDB
Qualitative Values A common question we get is how do we assign a qualitative value to the data? All data entered into the IEDB is entered as having either a positive or negative outcome. This va...
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Randi Vita created an article,
Data Export
You can export your search results into an Excel spreadsheet on any results page where you see the Export all results: Excel icon. The resulting spreadsheet will contain all of the information ...