Database Publications
Publications relevant to www.iedb.org; including meta-analyses performed by the IEDB team using data accessible through the database.
- Substantial gaps in knowledge of Bordetella pertussis antibody and T cell epitopes relevant for natural immunity and vaccine efficacy (2014)
- Navigating diabetes-related immune epitope data: resources and tools provided by the Immune Epitope Database (IEDB) (2013)
- Evaluation of peptide selection approaches for epitope-based vaccine design (2013)
- Properties of MHC class I presented peptides that enhance immunogenicity (2013)
- A molecular view of multiple sclerosis and experimental autoimmune encephalitis: What can we learn from the epitope data? (2013)
- NetMHCstab - predicting stability of peptide:MHC-I complexes; impacts for CTL epitope discovery (2013)
- HLA Class I Alleles Are Associated with Peptide-Binding Repertoires of Different Size, Affinity, and Immunogenicity (2013)
- SigniSite: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments (2013)
- Evaluating the Immunogenicity of Protein Drugs by Applying In Vitro MHC Binding Data and the Immune Epitope Database and Analysis Resource (2013)
- NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ (2013)
- Query enhancement through the practical application of ontology: the IEDB and OBI (2013)
- Positional bias of MHC class I restricted T-cell epitopes in viral antigens is likely due to a bias in conservation (2013)
- Structural analysis of B-cell epitopes in antibody:protein complexes (2012)
- Strategies to Query and Display Allergy-Derived Epitope Data from the Immune Epitope Database (2012)
- A comparison of epitope repertoires associated with myasthenia gravis in humans and nonhuman hosts (2012)
- The Immune Epitope Database: A Historical Retrospective of the First Decade (2012)
- A Meta-Analysis of the Existing Knowledge of Immunoreactivity against Hepatitis C Virus (HCV) (2012)
- Immune epitope database analysis resource (2012)
- Cost sensitive hierarchical document classification to triage PubMed abstracts for manual curation (2011)
- Towards defining molecular determinants recognized by adaptive immunity in allergic disease: an inventory of the available data (2011)
- A Model for Collaborative Curation, The IEDB and ChEBI Curation of Non-peptidic Epitopes (2011)
- Applications for T-cell epitope queries and tools in the Immune Epitope Database and Analysis Resource (2010)
- Hematopoietic cell types: Prototype for a revised cell ontology (2010)
- MHC class II epitope predictive algorithms (2010)
- OBI consortium. Modeling biomedical experimental processes with OBI (2010)
- Peptide binding predictions for HLA DR, DP and DQ molecules (2010)
- IEDB-3D: structural data within the immune epitope database (2010)
- Meta-analysis of all immune epitope data in the Flavivirus genus: inventory of current immune epitope data status in the context of virus immunity and immunopathology (2010)
- Design and utilization of epitope-based databases and predictive tools (2010)
- Limitations of Ab initio predictions of peptide binding to MHC class II molecules (2010)