Database Publications
Publications relevant to www.iedb.org; including meta-analyses performed by the IEDB team using data accessible through the database.
- Meta-analysis of immune epitope data for all Plasmodia: overview and applications for malarial immunobiology and vaccine-related issues (2009)
- The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: Application to MHC-peptide binding (2009)
- Classification of the universe of immune epitope literature: representation and knowledge gaps (2009)
- The Immune Epitope Database 2.0 (2009)
- Pre-existing immunity against swine-origin H1N1 influenza viruses in the general human population (2009)
- Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior (2009)
- B-cell epitope prediction (2008)
- ElliPro: a new structure-based tool for the prediction of antibody epitopes (2008)
- NetMHCpan, a method for MHC class I binding prediction beyond humans (2008)
- NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11 (2008)
- MHC motif viewer (2008)
- The Curation Guidelines of the Immune Epitope Database and Analysis Resource (2008)
- Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan (2008)
- Immune epitope database analysis resource (IEDB-AR) (2008)
- A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach (2008)
- Analysis of epitope information related to Bacillus anthracis and Clostridium botulinum (2008)
- An analysis of the epitope knowledge related to Mycobacteria (2007)
- Meeting Report: NIH Workshop on the Tuberculosis Immune Epitope Database (2007)
- Modeling the adaptive immune system: predictions and simulations (2007)
- Antibody-protein interactions: benchmark datasets and prediction tools evaluation (2007)
- Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines (2007)
- NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence (2007)
- Automating document classification for the Immune Epitope Database (2007)
- EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB) (2007)
- Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools (2007)
- Ab and T cell epitopes of influenza A virus, knowledge and opportunities (2007)
- Immune epitope mapping in the post-genomic era: lessons for vaccine development (2007)
- Integrating epitope data into the emerging web of biomedical knowledge resources (2007)
- The biocurator: connecting and enhancing scientific data (2006)
- Curation of complex, context-dependent immunological data (2006)