J. Greenbaum
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Activity overview
Latest activity by J. Greenbaum-
J. Greenbaum created an article,
Next-Generation IEDB Tools Website and API - Release 1.0
We are excited to announce that the initial release of the Next-Generation IEDB Tools Website is now open to the public! This is a complete redesign of the IEDB Analysis Resource with an emphasis ...
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J. Greenbaum created an article,
IEDB Analysis Resource v2.26 release notes (24 Feb 2022)
NEW: AxelF tool to enhance MHC-peptide binding predictions using expression data TCRMatch updated to version 1.0.2 with a significant speed increase Immunomebrowser chart download enabled Log4j vu...
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J. Greenbaum created an article,
IEDB Analysis Resource v2.25 release notes (31 Mar 2021)
NEW: TCRMatch tool added for prediction of TCR specificity based on sequence similarity to TCRs with known specificity Deimmunization tool stability updates Addressed issue whereby examples would ...
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J. Greenbaum created an article,
IEDB Analysis Resource v2.24 release notes (1 Oct 2020)
NEW: NetMHCpan 4.1 (EL and BA) incorporated into mhci binding web, API, and standalone tools NEW: NetMHCIIpan 4.0 (EL and BA) incorporated into mhcii binding web, API, and standalone tools
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J. Greenbaum created an article,
IEDB Analysis Resource v2.23 release notes (2 Jul 2020)
All code ported from Python 2 to Python 3, including standalone packages (Python 3.6 or higher is required.) The 'IEDB recommended' method for mhci binding predictions has changed to NetMHCpan ...
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J. Greenbaum created an article,
IEDB Analysis Resource v2.22 release notes (4 Sep 2019)
NEW: Docktope is incorporated as a new tool Class II binding predictor now allows predicting for various lengths (11-30) NetMHCIIpan 3.2 and NetMHCII 2.3 have been added to the class II binding pr...
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J. Greenbaum created an article,
IEDB Analysis Resource v2.20 release notes (14 Aug 2018)
NEW: Standalone Immunome Browser tool that allows users to map epitope sequences to proteins and visualize assay data NEW: MHC II NP - Prediction of naturally processed MHC II ligands Performance ...
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J. Greenbaum created an article,
IEDB Analysis Resource v2.19 release notes (25 Apr 2018)
v2.19 - April 2018 MHC class I binding: netMHCpan 4.0 incorporated as an option length-rescaling for netMHCpan 2.8 has been incorpored added the ability to select previous versions of several too...
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J. Greenbaum created an article,
IEDB Analysis Resource v2.18.1 release notes (7 Dec 2017)
Individual epitope results re-incorporated into the Population coverage tool More efficient routing of prediction requests for MHC class I and II binding predictions to improve user experience (...
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J. Greenbaum created an article,
IEDB Analysis Resource v2.18 release notes (17 Oct 2017)
v2.18 - October 2017 NEW: Lymphocyte Receptor Automated Modeling (LYRA) has been added and supports modeling 3D structures of B and T cell receptors. This replaces PIGS. NEW: A completely re-engi...