J. Greenbaum

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Activity overview

Latest activity by J. Greenbaum
  • J. Greenbaum created an article,

    Next-Generation IEDB Tools Website and API - Release 1.2

    Release 1.2 of the Next-Generation IEDB Tools Website is now live!  This release includes several new algorithms added to the T Cell Class I tool, as well as the initial public release of our updat...

  • J. Greenbaum created an article,

    Next-Generation IEDB Tools Website and API - Release 1.1

    Release 1.1 of the Next-Generation IEDB Tools Website is now live!  The main feature of this release is the migration of all computation to a compute cluster with 120 CPUs available.  This release ...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.27 release notes (25 May 2023)

    Major updates: New tool: Peptide eXpression annotator (pepX) helps to estimate tissue-specific peptide abundance from public RNA-Seq data NetMHCIIpan 4.1 has been incorporated into the MHC II bind...

  • J. Greenbaum created an article,

    Next-Generation IEDB Tools Website and API - Release 1.0

    We are excited to announce that the initial release of the Next-Generation IEDB Tools Website is now open to the public!  This is a complete redesign of the IEDB Analysis Resource with an emphasis ...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.26 release notes (24 Feb 2022)

    NEW: AxelF tool to enhance MHC-peptide binding predictions using expression data TCRMatch updated to version 1.0.2 with a significant speed increase Immunomebrowser chart download enabled Log4j vu...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.25 release notes (31 Mar 2021)

    NEW: TCRMatch tool added for prediction of TCR specificity based on sequence similarity to TCRs with known specificity Deimmunization tool stability updates Addressed issue whereby examples would ...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.24 release notes (1 Oct 2020)

    NEW: NetMHCpan 4.1 (EL and BA) incorporated into mhci binding web, API, and standalone tools NEW: NetMHCIIpan 4.0 (EL and BA) incorporated into mhcii binding web, API, and standalone tools

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.23 release notes (2 Jul 2020)

      All code ported from Python 2 to Python 3, including standalone packages (Python 3.6 or higher is required.) The 'IEDB recommended' method for mhci binding predictions has changed to  NetMHCpan ...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.22 release notes (4 Sep 2019)

    NEW: Docktope is incorporated as a new tool Class II binding predictor now allows predicting for various lengths (11-30) NetMHCIIpan 3.2 and NetMHCII 2.3 have been added to the class II binding pr...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.20 release notes (14 Aug 2018)

    NEW: Standalone Immunome Browser tool that allows users to map epitope sequences to proteins and visualize assay data NEW: MHC II NP - Prediction of naturally processed MHC II ligands Performance ...