J. Greenbaum

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Activity overview

Latest activity by J. Greenbaum
  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.24 release notes (1 Oct 2020)

    NEW: NetMHCpan 4.1 (EL and BA) incorporated into mhci binding web, API, and standalone tools NEW: NetMHCIIpan 4.0 (EL and BA) incorporated into mhcii binding web, API, and standalone tools

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.23 release notes (2 Jul 2020)

      All code ported from Python 2 to Python 3, including standalone packages (Python 3.6 or higher is required.) The 'IEDB recommended' method for mhci binding predictions has changed to  NetMHCpan ...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.22 release notes (4 Sep 2019)

    NEW: Docktope is incorporated as a new tool Class II binding predictor now allows predicting for various lengths (11-30) NetMHCIIpan 3.2 and NetMHCII 2.3 have been added to the class II binding pr...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.20 release notes (14 Aug 2018)

    NEW: Standalone Immunome Browser tool that allows users to map epitope sequences to proteins and visualize assay data NEW: MHC II NP - Prediction of naturally processed MHC II ligands Performance ...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.19 release notes (25 Apr 2018)

    v2.19 - April 2018 MHC class I binding: netMHCpan 4.0 incorporated as an option length-rescaling for netMHCpan 2.8 has been incorpored added the ability to select previous versions of several too...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.18.1 release notes (7 Dec 2017)

      Individual epitope results re-incorporated into the Population coverage tool More efficient routing of prediction requests for MHC class I and II binding predictions to improve user experience (...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.18 release notes (17 Oct 2017)

    v2.18 - October 2017 NEW: Lymphocyte Receptor Automated Modeling (LYRA) has been added and supports modeling 3D structures of B and T cell receptors.  This replaces PIGS. NEW: A completely re-engi...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.17 release notes (9 Jun 2017)

    v2.17 - June 2017 population coverage tool migrated to Django framework NEW population coverage standalone tool ability to email results for large predictions added to class I/II MHC binding predi...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.16.1 release notes (30 Mar 2017)

    v2.16.1 - March 2017 Updates to parallelization code to provide a more stable experience MHC class II binding predictions sent through the web interface are now parallelized so that many of the co...

  • J. Greenbaum created an article,

    IEDB Analysis Resource v2.16 release notes (16 Dec 2016)

    v2.16 - December 2016 NetMHCstabpan 1.0 incorporated into MHC class I prediction tools (web, API, standalone) included in MHC I standalone version 2.15.2 NetMHCIIpan 3.1 incorporated into MHC cl...