PHOTO: 2023 IEDB Virtual User Workshop - Day 1 to 3 (1 November to 3 November, 2023) - Presenters on Zoom Webinar
Our team holds an annual user workshop where we invite those new to the IEDB and experienced users who want to better understand and utilize this resource. The workshop is a great opportunity to learn about all the features of the IEDB database and tools, and to get hands-on individual support on how it can answer your research questions.
Following the success of the virtual user workshops in 2020 and 2021, the IEDB hosted a 3-day virtual workshop in 2022. Day 1 covered an overview of the IEDB curation process, database structure, and content. Day 2 explored the Next-Generation Tools and Analysis Resource, and day 3 covered specialized topics such as 3D structure analysis, the IEDB application programming interface (API), cancer, and HIV resources.
Dates: Wednesday, Nov. 1 - Friday, Nov. 3, 2023
Time: 8:00am to 12:00pm (Pacific Time)
This workshop was free of charge and was delivered virtually via Zoom Webinar. The available reference materials from the 2023 virtual event are outlined below.
Workshop Agenda (PDF Attachment)
- 2023 Virtual Workshop Agenda - V7 (Final)
Day 1 Presentations (see attachments at end of page)
- Introduction & Immune Epitope Database Overview
- Slides: 1.0 IEDB_Welcome&Logistics2023 V3 (Final) and 1.1 Database_Overview2023 V5 (Final)
- Video: YouTube
- Immune Epitope Analysis Resource Overview
- Slides: 1.2 IEDB_AnalysisResourceIntro2023 V6 (Final)
- Video: YouTube
- Accessing the Data: Query, Reporting & Examples
- Slides: 1.3 IEDB_QueryReportExamples2023 V6 (Final)
- Video: YouTube
- New Database Feature - Customized Data Exports
- Slides: 1.4 NewFeatures_CustomExport2023 V4 (Final)
- Video: YouTube
- Using the IEDB in Your Research
- Slides: 1.5 IEDBinResearch2023 V3 (Final)
- Video: YouTube
- Analysis Tools
- Slides: 1.6 IEDB_AnalysisTools2023 V4 (Final)
- Video: YouTube
- Day 1 Conclusion
- Slides: 1.7 IEDB_Closing&Survey2023 V2 (Final)
- Video: YouTube
Day 2 Presentations (see attachments at end of page)
- Introduction & Next-Generation Tools Overview
- Slides: 2.0 IEDB_Welcome&Overview2023 V3 (Final) and 2.1 IEDB_NextGenerationTools2023 V8 (Final)
- Video: YouTube
- T Cell Class I Tools - Binding, Processing & Immunogenicity
- Slides: 2.2 TCell_ClassI_BindProcessImmuno2023 V7 (Final)
- Video: YouTube
- Next-Generation Tool Pipelines - Cluster & PEPMatch
- Slides: 2.3 NXG_ClusterPEPMatch2023 V5 (Final)
- Video: Youtube
- T Cell Class II Tools - Binding, Processing & Immunogenicity
- Slides: 2.4 TCell_ClassII_BindProcessImmuno2023 V5 (Final)
- Video: Youtube
- B Cell Epitope Prediction
- Slides: 2.5 IEDB_BCellEpitopePredictions2023 V3 (Final)
- Video: YouTube
- TCRMatch (and BCRMatch)
- Slides: 2.6 TCRMatchBCRMatch2023 V2 (Final)
- Video: YouTube
- Day 2 Conclusion
- Slides: 2.7 IEDB_Closing&Survey2023 V2 (Final)
- Video: YouTube
Day 3 Presentations (see attachments at end of page)
- Introduction & IEDB-3D 2.0: Visualizing Structures in the IEDB
- Slides: 3.0 IEDB_Welcome&Overview2023 V2 (Final) and 3.1 IEDB-3D-2.0-2023 V4 (Final)
- Video: YouTube
- IEDB Query API (IQ-API)
- Slides: 3.2 NewFeatures_IQ-API2023 V4 (Final)
- Video: Youtube
- The Cancer Epitope Database and Analysis Resource (CEDAR)
- Slides: 3.3 CEDARIntro2023 V4 (Final)
- Video: Youtube
- CEDAR Prostate Cancer Meta-analysis
- Slides: 3.4 IEDB_ProMetaAnalysis2023 V3 (Final)
- Video: YouTube
- NIH Resources for Researchers: The LANL HIV Databases
- Slides: 3.5 IEDB_HIV.LANL V2 (Final)
- Video: YouTube
- IEDB, UniProt & Protein Ontology - A Collaboration
- Slides: 3.6 IEDB_UniProt_PRO2023 V3 (Final)
- Video: YouTube
- Day 3 Conclusion
- Slides: 3.7 IEDB_Closing&Survey2023 V2 (Final)
- Video: YouTube
Additional Resources Shared via Zoom (includes PDF presentations)
For more information on this or future events, contact us at workshop@iedb.org or visit the informational webpage (http://workshop.iedb.org/).
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